Galaxy | Tool Preview

seqtk_comp (version 1.4+galaxy0)

What it does

Reports composition of fasta/fastq sequences. For an example sequence like

::
>test0 ACTGACTGAA >ambig_ref ACGTCGTGTTVHDBN

The seqtk tool will report:

#chr       length #A #C #G #T #2 #3 #4 #CpG #tv #ts #CpG-ts
test0      11     4  2  2  2  0  0  1  0    0   0   0
ambig_ref  15     1  2  3  4  0  4  1  4    0   0   0

Attribution

This Galaxy tool relies on the seqtk toolkit from lh3/seqtk, developed by Heng Li at the Broad Institute