What it does

This filter selects from the IsoDE2 output file, genes that genes that have fold change (ratio between the gene expression in the two conditions in comparison) greater than or equal to the a certain threshold set by the user.

Input

• 1- IsoDE2 output file. It can be any of the output files generated by an IsoDE2 runs; for genes or isoforms/FPKM or TPM
• 2- Direction of over expression of interest to the user (genes over expressed in condition1, over expressed in condition 2, or overexpressed in either condition)
• 3- Minimim fold change of interest

Output

The output is a tabular file with the same fields as the input file, containing the subset of genes satisfying the conditions specified by the used.