Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.
The deunique.tree command is the reinserts the redundant sequence identiers back into a unique tree using a name file.
v1.21.0: Updated to Mothur 1.33