hicPlotAverageRegions (version 3.7.6+galaxy1)

Average regions matrix computed by hicAverageRegions:

Plot the log1p of the matrix values (log(Hi-C contacts+1)). This option is recommended.:

Plot the log of the matrix values. (log(Hi-C contacts)):

Color map to use for the heatmap:

Available color map names can be found here: https://matplotlib.org/examples/color/colormaps_reference.html

vMin:

Minimum value of the plotted score.

vMax:

Maximum value of the plotted score.

Image output format:

DPI for image:

Change the default resolution of the plot.

Plot of hicAverageRegions matrix

hicPlotAverage regions plots the data computed by hicAverageRegions. It shows the summed up and averaged regions around all given reference points. This is useful to determine the difference between samples if the TAD configuration is equal or changed.

For more information about HiCExplorer please consider our documentation on readthedocs.io