Mothur Overview
Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.
Command Documentation
The pairwise.seqs command will calculate uncorrected pairwise distances between sequencesi as a column-formatted_distance_matrix or phylip-formatted_distance_matrix.