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scHicPlotConsensusMatrices (version 4.1)

Matrix to compute on:

List of chromosomes to consider:

Please separate the chromosomes by space

Color map to use for the heatmap:

Available color map names can be found here: https://matplotlib.org/examples/color/colormaps_reference.html

DPI for image:

Change the default resolution of the plot.

Image output format:

Plot consensus matrices

scHicPlotConsensusMatrices plots the consensus (average) matrix of a cluster. This tool is useful to compare the single cell clusters.

For more information about scHiCExplorer please consider our documentation on readthedocs.io