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Nmds (version 1.39.5.0)

phylip - Distance Matrix:

axes - a starting configuration:

mindim - minimum dimensions (default 2):

maxdim - maximum dimensions (default 2):

iters - Number of random configuration to try (default 10):

maxiters - Number of iterations to try with each random configuration (default 500):

epsilon - acceptable stopping precision (default 1e-12):

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The nmds command generates non-metric multidimensional scaling data from a phylip_distance_matrix.

v1.20.0: Updated to mothur 1.33