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sarscov2formatter (version 1.0+galaxy0)
MSA to be used in HyPhy analysis
If not given it will be downloaded


Custom sript that performs necessary formatting operations for the SARS-CoV2 Selection Analysis workflow.

If using NCBI as data source the file can be obtained from If not given the tool will download it automatically.

If using non-NCBI data, the metadata input file must be tabular with the following columns: ID, collection_date, country, state (optional), and locality (optional). Optional columns should still be created even if they are not used.

Dates should be of the format: YYMMDD (example: May 1 2020 = 20200501).