Galaxy |

Map with MOSAIK v. 2 (version 2.2.28.0)

Will you select a reference genome from your history or use a built-in index?:

Select a reference genome:

Sequencing technology used:

FASTQ reads file:

Is this library mate-paired?:

Number of mismatches allowed per sequence:

Alignment candidate threshold:

Determines which hash regions will be aligned with Smith-Waterman

Smith-Waterman band width:

Maximum number of positions stored per seed:

Number of places in the reference the aligner will try to place a particular hash

Output format:

What it does

This tool uses MOSAIK v. 2 to align reads to a reference sequence.

License and citation

You can use this tool only if you agree to the license terms of: MOSAIK.

If you use this tool, please cite: