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SRST2 (version 0.2.0+galaxy2)
This is the file that tells you the ST number that is assigned to known combinations of alleles. Column 1 is the ST, and subsequent columns are the loci that make up the scheme.
E.g.'-', as in arcc-1
Fasta file/s for gene databases
Leave empty to map all
if either of its ends has unaligned overlap with the reference that is longer than this value
Any new results from this run will also be incorporated

SRST2

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST (Multi Locus Sequence Types) database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs (Serotypes) and/or reference genes

Read more about the tool: https://holtlab.net/2014/12/27/behind-the-paper-srst2-for-short-read-sequence-typing-of-bacterial-pathogens/

Input

Learn more about all inputs and their formates: https://github.com/katholt/srst2#input-read-formats-and-options

Output

Learn more about all outputs: https://github.com/katholt/srst2#output-files