What it does
This tool imports data stored in a tabular text file. Column titles (chip IDs) must match the IDs of the .cond file. GPL annotation code is also required to fetch annotations from GEO.
Exemple
Header of input tabular text file
"" "GSM80460" "GSM80461" "GSM80462" "GSM80463" "GSM80464" "1007_s_at" -0.0513991525066443 0.306845500314283 0.0854246562526777 -0.142417044615852 0.0854246562526777 "1053_at" -0.187707155126729 -0.488026018218199 -0.282789700980404 0.160920188181103 0.989865622866287 "117_at" 0.814755482809874 -2.15842936260448 -0.125006361067033 -0.256700472111743 0.0114956388378294 "121_at" -0.0558912008920451 -0.0649174766813385 0.49467161164755 -0.0892673380970874 0.113700499164728 "1294_at" 0.961993677420255 -0.0320936297098533 -0.169744675832317 -0.0969617298870879 -0.181149439104566 "1316_at" 0.0454429707611671 0.43616183931445 -0.766111939825723 -0.182786075741673 0.599317793698226 "1405_i_at" 2.23450132056221 0.369606070031838 -1.06190243892591 -0.190997225060914 0.595503660502742
The .cond file should look like this
GSM80460 series of 16 tumors GSM80460 OSCE-2T SERIES OF 16 TUMORS GSM80461 series of 16 tumors GSM80461 OSCE-4T Series of 16 Tumors GSM80462 series of 16 tumors GSM80462 OSCE-6T Series of 16 Tumors GSM80476 series of 4 normals GSM80476 OSCE-2N Series of 4 Normals GSM80477 series of 4 normals GSM80477 OSCE-9N Series of 4 Normals