Galaxy |

tximport (version 1.22.0)

Counts file(s):

Select the source of the quantification file:

Is the gene id part of the counts file or will be obtained from an external file?:

Select a tx-to-gene table/GFF from your history or use a built-in file?:

Select an annotation version:

If the build of your interest is not listed contact your Galaxy admin

Summarization using the abundance (TPM) values?:

Current version only works in 'merge' mode: A single table of gene summarizations is generated with one column for each sample file. Take into account that DEseq2 package in Galaxy requires one table per sample.