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Stacks2: clone filter (version 2.55+galaxy4)

Single-end or paired-end reads:

Singles-end reads:

Barcode location:

Capture discarded reads to a file:

Length of the single-end oligo sequence in dataset:

Length of the paired-end oligo sequence in dataset:

Do not trim off the random oligo sequence (if oligo is inline):

Add log output as dataset:

The clone_filter program is designed to identify PCR clones.

Created by:

Stacks was developed by Julian Catchen with contributions from Angel Amores, Paul Hohenlohe, and Bill Cresko

Project links:

Stacks website