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FalseDiscoveryRate (version 3.1+galaxy0)

Identifications from searching a target-decoy database:

select idxml data sets(s)

Perform FDR calculation on PSM level:

Perform FDR calculation on peptide level and annotates it as meta value:

(Note: if set, also calculates FDR/q-value on PSM level.)

Perform FDR calculation on protein level:

FDR controls

FDR control 0

Parameter section for the FDR calculation algorithms

Parameter section for the FDR calculation algorithm 0

Advanced Options

Advanced Options 0

Optional outputs:

Estimates the false discovery rate on peptide and protein level using decoy searches.