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PepNovoAdapter (version 2.8+galaxy0)

input file:

select mzml data sets(s)

Name of the directory where the model files are kept:

Find optimal precursor mass and charge values:

Do not correct charge:

Do not correct the precursor m/z value that appears in the file:

Do not remove low quality spectra:

The fragment tolerance (between 0 and 0.75 Da:

Set to -1.0 to use model's default setting)

The precursor mass tolerance (between 0 and 5.0 Da:

Set to -1.0 to use model's default setting)

Name of the model that should be used:

Enzyme used for digestion (default TRYPSIN):

Returns peptide sequence of the specified length (only lengths 3-6 are allowed):

Number of solutions to be computed:

Fixed modifications, specified using Unimod (www.unimod.org) terms:

e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'

Variable modifications, specified using Unimod (www.unimod.org) terms:

e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'

Advanced Options

Advanced Options 0

Optional outputs:

Adapter to PepNovo supporting all PepNovo command line parameters. The results are converted from the PepNovo text outfile format into the idXML format.

For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/TOPP_PepNovoAdapter.html