Galaxy | Tool Preview

Convert XMFA to gapped GFF3 (version 2015_02_13.1)
Should be provided in the same order as in original progressiveMauve run
maximum length of a match_part feature. Lower number = larger GFF output
progressiveMauve (un)helpfully strips original sequence IDs and replaces with integer numbers. This option lets you generate the alignment relative to e.g. the second genome if you wished to display against that base sequence

What it does

XMFA Alignments are great, but now you need a way to visualize this data!

This tool provides a conversion step to GFF3 formatted output consiting of ``match``es and ``match_part``s with scores indicating percent identity over that chunk of sequence.

System Message: WARNING/2 (<string>, line 7); backlink

Inline literal start-string without end-string.

System Message: WARNING/2 (<string>, line 7); backlink

Inline literal start-string without end-string.

A rendering of the output GFF3 file in JBrowse is shown below:

/repository/static/images/451226d76cd8e62d/xmfa2gff3.png