Memote Model Quality Check
The GEM Check Memote tool runs the Memote test suite to generate a detailed report on the quality of a genome-scale metabolic model (GEM). Memote assesses various model characteristics such as stoichiometric consistency and model annotations.
Inputs
Model to check with memote: The metabolic model in SBML format (.xml or .sbml) to be analyzed by Memote. Ensure the file conforms to SBML standards.
Outputs
Memote report: An HTML file that contains the full results of the Memote assessment. This report includes overall model quality scores and highlights any issues that need correction.
Usage Example
- Upload your SBML model file.
- Run the tool to generate the Memote report.
- Review the report to identify any errors or areas for improvement in the model.
Troubleshooting
If the tool fails to run, ensure that your input file is a valid SBML model. Incorrect file formats or non-compliant models may trigger errors.
References
Full documentation and further examples can be found at: https://doi.org/10.1038/s41587-020-0446-y