Galaxy |

Galaxy | Tool Preview

View repository View change log Browse repository tip files Download as a .tar.gz file Download as a .tar.bz2 file Download as a zip file

bax2bam (version 0.0.11+galaxy0)

Select files:

Should be from the same movie.

Select output read type:

Select pulse features in output BAM:

Store full, 16-bit IPD/PulseWidth data?:

Instead of downsampled, 8-bit encoding.

Output BAMs in internal mode?:

Currently this indicates that non-sequencing ZMWs should be included in the output scraps BAM file, if applicable.

What it does

bax2bam converts the legacy PacBio basecall format (bax.h5) into the BAM basecall format.

Input

Output

References

More information can be found on the GitHub repositories bax2bam and PacBio Bioconda.