This data manager downloads MITOS and MITOS2 reference data for use in Galaxy.

For MITOS the reference data includes

• protein data bases derived from RefSeq release 39 (see Bernt et al. 2012)
• covariance models for tRNAs and rRNAs as described in Jühling et al 2012

Data is downloaded from https://zenodo.org/record/2683856.

For MITOS2 the reference data sets are available for three different taxons

• Metazoa
• Fungi
• Opisthokonta

these have been computed for RefSeq release 63 and 89. In addition the reference data for MITOS1 has been converted to be usable in MITOS2. contains

The reference data sets contain:

• protein data bases derived from the corresponding RefSeq release Donath et al. 2019
• covariance models computed for the data in the RefSeq releas based on the MITOS1 models
• in addition for Metazoa Release 63 also hidden markov models are available as described in Al Arab et al. 2017

Data is downloaded from https://zenodo.org/record/4284483.