What it does

This tool allows you to import quickly a BAM file, a chromosome info file or a SVDetect output file from you computer as inputs for SVDetect.

Example of chromosome file

Input len file:

1  chr1  247249719
2  chr2  242951149
3  chr3  199501827
4  chr4  191273063
5  chr5  180857866
6  chr6  170899992
7  chr7  158821424
8  chr8  146274826
9  chr9  140273252
10  chr10  135374737
11  chr11  134452384
12  chr12  132349534
13  chr13  114142980
14  chr14  106368585
15  chr15  100338915
16  chr16  88827254
17  chr17  78774742
18  chr18  76117153
19  chr19  63811651
20  chr20  62435964
21  chr21  46944323
22  chr22  49691432
23  chrX  154913754
24  chrY  57772954

Contact Bruno Zeitouni (svdetect@curie.fr) for any questions or concerns about the Galaxy implementation of SVDetect.