What it does

Create MuData from AnnData is a tool that allows creating a muon.MuData object out of two or more AnnData objects for multimodal analysis. The multimodal data is created by combining AnnData objects as h5ad files into a MuData object as a h5mu file using muon. Furthermore, it runs pp.intersect_obs to keep only entries present in both modalities (AnnData objects) in the final MuData file.