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Nucleosome Predictions (version 3.0)

Input sequence file (.fasta format):

Nucleosomes Concentration:

Nucleosomes concentration: the default value = 0.1

Temperature Scaling:

Temperature scaling: the default value = 1

Raw Binding:

Raw Binding: When 'No' (default), then the output will be the default average occupancy probabilities. When 'yes', then the output will be the raw nucleosome binding log-ratio per basepair

What it does This tool allows you to submit a genomic sequence and to recieve a prediction of the nucleosomes positions on it, based on the nucleosome-DNA interaction model that we developed in these papers: This version (version 3) is applicable to all species.

The tool takes a sequence .fasta file and finds all positions of the matrices above the background