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OMSSAAdapter (version 2.8+galaxy0)

Input file:

select mzml data sets(s)

Precursor monoisotopic mass tolerance:

Unit of precursor mass tolerance:

Fragment mass error in Dalton:

NCBI formatted FASTA files:

The .psq filename should be given, e.g. 'SwissProt.fasta.psq'. If the filename does not end in '.psq' (e.g., SwissProt.fasta) the psq suffix will be added automatically. Non-existing relative file-names are looked up via'OpenMS.ini:id_db_dir' select fasta data sets(s)

Minimum precursor ion charge:

Maximum precursor ion charge:

Fixed modifications, specified using Unimod (www.unimod.org) terms:

e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'

Variable modifications, specified using Unimod (www.unimod.org) terms:

e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'

number of missed cleavages allowed:

The enzyme used for peptide digestion:

maximum number of hits retained for one spectrum:

Note: even when set to 1 OMSSA may report multiple hits with different charge states

the maximum e-value allowed in the hit list:

If you set this parameter too small (e.g., he=1), this will effectively introduce FDR filtering. Thus, allowing a less stringent FDR during post-processing will nevertheless return the (better) FDR introduced here, since mediocre hits are not even reported

Advanced Options

Advanced Options 0

Optional outputs: