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RNAalifold (version 2.1.6.0)
Clustal file:
temperature [°C]:
-T
how to treat dangling end energies:
-d
calculate partition function:
-p
Most Informative Sequence:
--mis
calculate maximum expected accuracy:
--MEA
number of structures:
--stochBT_en
advanced options:
RNAalifold
Input format
RNAalifold requires one input file - Clustal file
Outputs
energy of the consensus structures in the clustal file
several possible postscript images bundled together in a tar file