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Sens.spec (version 1.39.5.0)

Select a Distance Matrix Format:

column - Distance Matrix:

Select a Method:

count - a count_table:

generated by count.seqs

list - OTU List:

phylip,column - Distance Matrix:

label - Select OTU Labels to include:

By default all are included if no selection is made.

precision - Precision for rounding distance values:

cutoff - Distance Cutoff threshold - ignored if not > 0:

Ignore pairwise distances larger than this, a common value would be 0.10

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The sens.spec command takes a list and either a column or phylip distance matrix to determine the quality of OTU assignment.