What it does

Using phyloseq and customized R function, this tool constructs heatmap plot and ordination plot with the ordination methods to visualise data structure.

Inputs/Outputs

Input

data file (format rdata): The informations of data in one phyloseq object. This file is the result of "FROGS Phyloseq Import Data tool".

distance file (format tabular): The data file containing beta diversity distance matrix. This file is the result of "FROGS Phyloseq Beta Diversity tool".

Output

html file (format HTML):

The review of data structure with an ordination plot and with an heatmap plot:

Contact

Contacts: frogs@inra.fr

Repository: https://github.com/geraldinepascal/FROGS

Please cite the FROGS Publication: Escudie F., Auer L., Bernard M., Cauquil L., Vidal K., Maman S., Mariadassou M., Combes S., Hernandez-Raquet G., Pascal G., 2016. FROGS: Find Rapidly OTU with Galaxy Solution. In: ISME-2016 Montreal, CANADA , http://bioinfo.genotoul.fr/wp-content/uploads/FROGS_ISME2016_poster.pdf

Depending on the help provided you can cite us in acknowledgements, references or both.