What it does

Principal component analysis (PCA) can be used to determine the relationship between statistically meaningful conformations (major global motions) sampled during the trajectory.

Input

• Input file in PDB format
• Input file in DCD format

Output

• Image (as PNG) of the PCA plot
• Image (as PNG) of the PCA clustered plot
• Image (as PNG) of the first principal component plotted on RMSF
• Tab-separated file of raw data