We strongly encourage you to read the Tutorials before using IsoCor.

usage:

isocorcli [-h] [-M M] [-D D] [-I I] -t TRACER [-r RESOLUTION] [-m MZ_OF_RESOLUTION] [-f {orbitrap,ft-icr,constant,datafile}] [-p TRACER_PURITY] [-n] [-v] inputdata

correction of MS data for naturally occurring isotopes

positional arguments:

inputdata measurements file to process

optional arguments:

-h, --help	show this help message and exit
-M M	path to metabolites database
-D D	path to derivatives database
-I I	path to isotopes database
-t TRACER, --tracer TRACER
	the isotopic tracer (e.g. "13C")
-r RESOLUTION, --resolution RESOLUTION
	HR only: resolution of the mass spectrometer (e.g. 1e4)
-m MZ_OF_RESOLUTION, --mz_of_resolution MZ_OF_RESOLUTION
	HR only: mz at which resolution is given (e.g. "400")
-f FORMULA_ORIGIN, --resolution_formula_code FORMULA_ORIGIN
	HR only: spectrometer formula code
-p TRACER_PURITY, --tracer_purity TRACER_PURITY
	purity vector of the tracer
-n, --correct_NA_tracer
	flag to correct tracer natural abundance
-v, --verbose	flag to enable verbose logs