Galaxy |

modify genomic coordinates (version 1.0.0)

Input File Format:

Input File:

shrink to the start of the feature:

shrink to the end of the feature:

extend to the 5' direction:

extend to the 3' direction:

This tool reads a list of transcripts and modifies each feature by:

shrinking it to the n first nucleotides or the n last nucleotides, or
extending it to n nucleotides towards the 5' direction (upstream) or the 3' direction (downstream).

Note that the 5' or 3' direction depends on the orientation of the feature (the 5' end of a transcript located on the minus strand is on the right hand of this transcript!).

The tool needs a transcript file, its format, and outputs a new transcript file.