usage: add_matesequence [-h] -a FILE_TO_ANNOTATE -s ANNOTATE_SOURE -o
                        OUTPUT_PATH [--version]

Annotate reads with Mate Sequence in tag field

optional arguments:
  -h, --help            show this help message and exit
  -a FILE_TO_ANNOTATE, --file_to_annotate FILE_TO_ANNOTATE
                        Annotate reads in this file with their mate sequence
  -s ANNOTATE_SOURE, --annotate_soure ANNOTATE_SOURE
                        Use this file to find the mate sequence (can be same
                        file as file_to_annotate)
  -o OUTPUT_PATH, --output_path OUTPUT_PATH
                        Write resulting BAM file to this path
  --version             show program's version number and exit