Galaxy |

MSFraggerAdapter (version 2.8+galaxy0)

Set to yes, if you have read and agreed to the MSFragger license terms:

Maximum Java heap size (in MB):

Input File with specta for MSFragge:

select mzml,mzxml data sets(s)

Protein FASTA database file path:

select fasta data sets(s)

Recalculate peptide to protein association using OpenMS:

Annotates target-decoy information

Search Tolerances

Search Tolerances 0

In-Silico Digestion Parameters

In-Silico Digestion Parameters 0

Variable Modification Parameters

Variable Modification Parameters 0

Spectrum Processing Parameters

Spectrum Processing Parameters 0

Open Search Features

Open Search Features 0

Static Modification Parameters

Static Modification Parameters 0

Advanced Options

Advanced Options 0

Optional outputs:

Peptide Identification with MSFragger. Important note: The Regents of the University of Michigan (“Michigan”) grants us permission to redistribute the MS Fragger application developed by Michigan within the OpenMS Pipeline and make available for use on related service offerings supported by the University of Tubingen and the Center for Integrative Bioinformatics. Per the license agreement the use of the pipeline and associated materials is for academic research, non-commercial or educational purposes. Any commercial use inquiries must be directed to the University of Michigan Technology Transfer Office at techtransfer@umich.edu. All right title and interest in MS Fragger shall remain with the University of Michigan.

For details, please see the supplied license file or https://raw.githubusercontent.com/OpenMS/THIRDPARTY/master/All/MSFragger/License.txt

For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_MSFraggerAdapter.html