pyCalculateChromosomeLengths

pyCalculateChromosomeLengths is part of the pyCRAC package. Takes a genome sequence in fasta or tab format and generates a tab-delimited file showing chromosome name and chromosome length.

Parameter list

Options:

-f chromosomes.fasta, --input_file=chromosomes.fasta
                      provide the name and path of your fasta or tab genomic
                      sequence file. Default is standard input.
--file_type=fasta
                      provide the file type (fasta or tab). Default is fasta