pyFasta2Tab

pyFasta2Tab is part of the pyCRAC package. Converts fasta to tabular format. Is used to convert your reference sequences in fasta format to the tabular format that pyCRAC uses for almost all tools.

Example:

>sequence1
ATAGGATACATAACCATATTATGAGACC

Is converted into:

sequence1   ATAGGATACATAACCATATTATGAGACC

The pyCRAC package lo

Parameter list

Options:

-f fasta_file, --input_file=fasta_file
                      provide the name and path of your fasta input file.
                      Default is standard input.