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Sort.seqs (version
format must be fasta
format must be qual454
format must be mothur.sff.flow
format must be mothur.groups
format must be mothur.names
format must be mothur.seq.taxonomy
format must be mothur.accnos
format must be mothur.count_table (generated by count.seqs)

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The sort.seqs command puts sequences from a fasta, name, group, quality, flow or taxonomy file in the same order. You can provide an accnos file to indicate the order you want, otherwise mothur will use the order of the first file it reads.