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Run a core set of QIIME diversity analyses (version 1.9.1.0)
To decide this value, review the output of the ‘biom summarize-table’
It specifies changes to the default behavior
This is useful if, for example, when working with non-amplicon BIOM tables, or if a reliable tree is not available
The column headers in the mapping file should be passed as a comma-separated list. By default, no categorical analyses are performed

What it does

This tool calculates alpha diversity, or within-sample diversity, using an OTU table.

The resulting file(s) is a tab-delimited text file, where the columns correspond to alpha diversity metrics and the rows correspond to samples and their calculated diversity measurements. When a folder is given as input (-i), the script processes every otu table file in the given folder, and creates a corresponding file in the output directory.

More information about this tool is available on QIIME documentation.