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LotuS2 (version 2.23+galaxy2)
Needed to demultiplex the FASTQ files using sdm. If the FASTQ are already demultiplexed, this can be omitted.
E.g. 16S primer fwd
E.g. 16S primer rev
Other Clustering Options
Other Clustering Options 0
Other Taxonomy Options
Other Taxonomy Options 0
Other options
Other options 0

If you have separate FASTA and quality files, these can be combined in a FASTQ file using the "Combine FASTA and QUAL into FASTQ" tool.

The full LotuS2 documentation can be found at