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Get.seqs (version
fastq - allows you to select sequences from your fastq file
generated by count.seqs

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The get.seqs command takes a list of sequence names and either a fasta, name, group, list, or taxonomy file to generate a new file that contains only the sequences in the list. This command may be used in conjunction with the list.seqs command to help screen a sequence collection.

v.1.27.0 : Updated to Mothur 1.33, added count and fastq params