Galaxy |

GEMINI annotate (version 0.10.1.0)

GEMINI database:

Only files with version 0.10.1 are accepted.

File containing the annotations in BED format:

(-f)

The name of the column to be added to the variant table:

(-c)

How should the annotation file be used?:

(-a)

Column to extract information from for list annotations:

(-e)

What data type(s) should be used to represent the new values in the database?:

(-t)

Operation to apply to the extract column values ...:

in the event that a variant overlaps multiple annotations in your annotation file. (-o)

What it does

It is inevitable that researchers will want to enhance the gemini framework with their own, custom annotations. gemini provides a sub-command called annotate for exactly this purpose.

Citation

If you use GEMINI in your research, please cite the following manuscript: