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GEMINI load (version 0.10.1.0)

VCF file to be loaded in the GEMINI database:

The annotations to be used with the input vcf:

(-t)

Sample information file in PED+ format:

(-p)

Choose a gemini annotation database:

Do not load GERP scores at base pair resolution:

(--skip-gerp-bp)

Do not load CADD scores:

(--skip-cadd)

Do not load gene tables:

(--skip-gene-tables)

Genotypes exist in the file, but should not be stored:

(--no-load-genotypes)

There are no genotypes in the file:

e.g. some 1000G VCFs (--no-genotypes)

Keep only variants that pass all filters:

e.g. some 1000G VCFs (--passonly)

What it does

Before we can use GEMINI to explore genetic variation, we must first load our VCF file into the GEMINI database framework. We expect you to have first annotated the functional consequence of each variant in your VCF using either VEP or snpEff.

http://gemini.readthedocs.org/en/latest/content/loading.html

Citation

If you use GEMINI in your research, please cite the following manuscript: