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DIAlignR (version 1.2.0+galaxy0)
Sample file(s) in .MZML format.
Sample file in .OSW format.
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DIAlignR

DIAlignR is an R package for retention time alignment of targeted mass spectrometric data, including DIA and SWATH-MS data. This tool works with MS2 chromatograms directly and uses dynamic programming for alignment of raw chromatographic traces. DIAlignR uses a hybrid approach of global (feature-based) and local (raw data-based) alignment to establish correspondence between peaks.

For more information see the DIAlignR documentation.