Check Format

Description

Workflow position

Input files

Parameters

Data matrix file

variable x sample dataMatrix tabular separated file of the numeric data matrix, with . as decimal, and NA for missing values; the table must not contain metadata apart from row and column names; the row and column names must be identical to the rownames of the sample and variable metadata, respectively (see below)

Sample metadata file

sample x metadata sampleMetadata tabular separated file of the numeric and/or character sample metadata, with . as decimal and NA for missing values

Variable metadata file

variable x metadata variableMetadata tabular separated file of the numeric and/or character variable metadata, with . as decimal and NA for missing values

Make syntactically valid sample and variable names

if set to 'yes', sample and variable names will converted to syntactically valid names with the 'make.names' R function when required (e.g. an 'X' is added to names starting with a digit, blanks will be converted to '.', etc.)

Output files

dataMatrix_out.tabular

dataMatrix data file; may be identical to the input dataMatrix in case no renaming of sample/variable names nor re-ordering of samples/variables (see the 'information' file for the presence/absence of modifications)

sampleMetadata_out.tabular

sampleMetadata data file; may be identical to the input sampleMetadata in case no renaming of sample names nor re-ordering of samples (see the 'information' file for the presence/absence of modifications)

variableMetadata_out.tabular

variableMetadata data file; may be identical to the input variableMetadata in case no renaming of variable names nor re-ordering of variables (see the 'information' file for the presence/absence of modifications)

information.txt

Text file with all messages when error(s) in formats are detected

Working example

See the W4M00001a_sacurine-subset-statistics, W4M00001b_sacurine-complete, W4M00002_mtbls2, or W4M00003_diaplasma shared histories in the Shared Data/Published Histories menu (https://galaxy.workflow4metabolomics.org/history/list_published)

NEWS