Galaxy |

cap3 (version 1.2.0)

Input sequences to assemble:

Input sequences to assemble

specify overlap length cutoff > 15 (40):

-o option. must be > 15. 40 by default

specify overlap percent identity cutoff N > 65 (90):

-p option. must be > 65. 90 by default

What it does

This tool is a CAP3 wrapper developed for the visitor2 set of worflows

Under this conditions, it takes as input a set of blast hits in fasta format and performs CAP3 assembly on these sequences

Standard CAP3 outputs (Standard Output, Contigs Qual, Contigs Link, Ace and Info) are kept hidden in the Galaxy history (feel free to reveal these hidden datasets).

Standard CAP3 outputs Contigs and Singlets are returned in the history, as well as a merge of these two datasets (Contigs and singlets)

Acknowledgments

This Galaxy tool makes use of the package_cap3_3 Galaxy package developed by jjohnson.