Galaxy |

miRPlant (version 1.0.0)

Series

Series 0

Will you select a reference genome from your history or use a built-in index?:

Built-ins were indexed using default options

Select a reference genome:

If your genome of interest is not listed, contact the Galaxy team

annotate rfam nocoding RNAs(excluding miRNA):

Will you select a reference genome from your history or use a built-in index?:

Built-ins were indexed using default options

Select a reference:

If your reference of interest is not listed, contact the Galaxy team

report end-to-end hits less than v mismatches for rfam mapping:

delet rfam mapped reads:

format:

phred:

3' adapter sequence:

minimum adapter map nts:

minimum microRNA length:

maximum microRNA length:

number of allowed mismatches when mapping reads to precursors:

number of nucleotides upstream of the mature sequence to consider:

number of nucleotides downstream of the mature sequence to consider:

a read is allowed to map up to this number of positions in the genome:

Maximal space between miRNA and miRNA*:

Flank sequence length of miRNA precursor:

Maximal free energy allowed for a miRNA precursor: