Galaxy |

microRNA (version 1.0.0)

Will you select a reference genome from your history or use a built-in index?:

Built-ins were indexed using default options

Select a reference genome:

If your genome of interest is not listed, contact the Galaxy team

Analysis known microRNAs(eg. from mirbase):

mature microRNA sequence file:

precursor microRNA sequence fie:

Raw data configs file:

Input Fasta. file of candidate microRNA sequence:

number of allowed mismatches when mapping reads to genome:

number of nucleotides upstream of the mature sequence to consider:

number of nucleotides downstream of the mature sequence to consider:

a read is allowed to map up to this number of positions in the genome:

Maximal space between miRNA and miRNA*:

Flank sequence length of miRNA precursor:

Maximal free energy allowed for a miRNA precursor: