Galaxy |

siRNA_pipeline (version 1.0.0)

Series

Series 0

format:

phred:

Will you select a reference genome from your history or use a built-in index?:

Built-ins were indexed using default options

Select a reference genome:

If your genome of interest is not listed, contact the Galaxy team

Will you select a rfam reference from your history or use a built-in index?:

Built-ins were indexed using default options

Select a reference :

If your rfam of interest is not listed, contact the Galaxy team

gff file:

number of allowed mismatches when mapping reads to genome:

report end-to-end hits less than v mismatches:

3' adapter sequence:

a read is allowed to map up to this number of positions in the genome:

distance of tag to merged a cluster:

the length of the upstream and downstream,used in position annotate:

Do or not annotate siRNAs by function:

centromere file input:

plot span:

Do or not identify Difference Expression Clusters: