Galaxy | Tool Preview

Scmap index cells (version 1.6.4+galaxy0)
File with serialized SingleCellExperiment object as produced by 'scmap select features'
Number of chunks into which the expr matrix is split
Number of clusters per group for k-means clustering
ID of the training dataset
Should the expression data be removed after classifier is trained?
scmap-cell contains k-means step which makes it stochastic, i.e. running it multiple times will provide slightly different results. A fixed random seed ensures reproducibility.
More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html

Version history 1.6.4+galaxy0: Update scmap-cli to 0.1.0 1.6.3+galaxy0: Update scmap-cli to 0.0.11 1.6.2+galaxy0: Update scmap-cli to 0.0.10 1.6.1+galaxy0: Update scmap-cli to 0.0.9. 1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.