Galaxy |

Extract reads (version 1.1.2)

select input type:

accession:

aligned region (chr:start-end):

mate-pair distance (from-to):

output BAM header:

aligned or unaligned reads:

only primary aligments:

minimum mapping quality:

This tool extracts reads from sra archives using sam-dump. Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. The sam-dump program is developed at NCBI, and is available at: http://github.com/ncbi/sra-tools Please submit inquiries and bug reports to http://github.com/mdshw5/sra-tools-galaxy.