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Stacks: assemble read pairs by locus (version 1.46.1)
only R2 reads
If not selected, the tool will only produce of collection of fasta files (one per locus) containing reads ready to assemble.

What it does

This program will run each of the Stacks and utilities to assemble pair-end reads from STACKS pipeline results

Input file

Output from denovo_map or ref_map

Output file

A collated.fa file containing assembled contigs for each locus

Created by:

Stacks was developed by Julian Catchen with contributions from Angel Amores, Paul Hohenlohe, and Bill Cresko

Project links:

Stacks website

Stacks manual

Stacks google group