Galaxy |

Galaxy | Tool Preview

View repository View change log Browse repository tip files Download as a .tar.gz file Download as a .tar.bz2 file Download as a zip file

VSearch alignment (version 2.8.3.0)

Select your FASTA file:

(--allpairs_global)

ID definition:

(--iddef)

Reject hit if identity is lower than this value:

(--id)

Output all pairwise alignments:

This option overrides all other accept/reject options including identity. (--acceptall)

Reject if fraction of query seq. aligned lower than this value:

(--query_cov)

User defined tabular output:

(--userfields)

What it does

Pairwise alignments of all sequences.

Alignment options (most searching options also apply)

`--allpairs_global FILENAME`
	perform global alignment of all sequence pairs
`--alnout FILENAME`
	filename for human-readable alignment output
`--acceptall`	output all pairwise alignments

For details about this tool, please refer to the GitHub repository or the vsearch manual.