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Align sequences (version 1.9.1.0)

Input fasta file:

Method for aligning sequences:

Method for performing pairwise alignment in PyNAST:

Fasta file for template alignment:

Minimum sequence length to include in alignment:

By default, 75% of the median input sequence length

Minimum percent sequence identity to closest blast hit to include sequence in alignment:

What it does

This tool aligns the sequences in a FASTA file to each other or to a template sequence alignment, depending on the method chosen.

More information about this tool is available on QIIME documentation.